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Dna Sequence Alignment Software freeware
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Dna Sequence Alignment Software

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Added: June 23, 2013 | Visits: 203

MUMmerGPU MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.



Platforms: *nix

License: Freeware Size: 51.2 KB Download (16): MUMmerGPU Download

Added: February 01, 2010 | Visits: 930

Algorithm::NeedlemanWunsch Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =...





Platforms: *nix

License: Freeware Size: 10.24 KB Download (86): Algorithm::NeedlemanWunsch Download

Added: August 21, 2013 | Visits: 229

FSA For Linux FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.


Platforms: *nix

License: Freeware Size: 9.61 MB Download (20): FSA For Linux Download

Released: November 04, 2012  |  Added: November 04, 2012 | Visits: 244

UGENE UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. for WindowsAll


Platforms: Windows

License: Freeware Download (51): UGENE Download

Added: September 07, 2013 | Visits: 318

Staden Package A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.


Platforms: Mac

License: Freeware Size: 4.11 MB Download (34): Staden Package Download

Released: November 24, 2012  |  Added: November 24, 2012 | Visits: 411

CLC DNA Workbench for Mac OS This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. Some analyses are: - Assembly of DNA sequencing data - Graphically and...


Platforms: Mac

License: Freeware Size: 52.6 MB Download (33): CLC DNA Workbench for Mac OS Download

Released: June 27, 2012  |  Added: June 27, 2012 | Visits: 263

FSA FSA is a probabilistic multiple sequence alignment algorithm which uses a 'distance-based' approach to aligning homologous protein, RNA or DNA sequences.


Platforms: Mac, BSD, Linux

License: Freeware Size: 9.61 MB Download (29): FSA Download

Added: January 26, 2010 | Visits: 655

NeoBio NeoBio project consists of Bioinformatics algorithms in Java. What algorithms? The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman & Wunsch (global alignment) and Smith & Waterman (local alignment)....


Platforms: *nix

License: Freeware Size: 102.4 KB Download (91): NeoBio Download

Released: July 23, 2012  |  Added: July 23, 2012 | Visits: 237

DNA Replicator DNA Replicator is a graphical tool (written in java) that compute the complementary sequence from an input DNA sequence. It's a really easy used application.


Platforms: Windows, Mac, Linux

License: Freeware Size: 9.94 KB Download (27): DNA Replicator Download

Released: September 13, 2012  |  Added: September 13, 2012 | Visits: 259

NeedlemanWunsch Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more! See our sister project local alignment using Smith-Waterman: http://sourceforge.net/projects/smithwaterman/


Platforms: Mac, BSD, Linux

License: Freeware Size: 36.87 KB Download (27): NeedlemanWunsch Download

Added: November 30, 2013 | Visits: 166

ngsview NGSView is a generally applicable, flexible and extensible next-generation sequence alignment editor. The software allows for visualization and manipulation of millions of sequences simultaneously on a desktop computer, through a graphical interface.


Platforms: *nix

License: Freeware Size: 77.7 MB Download (22): ngsview Download

Added: August 04, 2008 | Visits: 903

BVTech Plasmid BVTech Plasmid is DNA plasmid drawing software that you can use to draw circle or linear plasmid maps with double strands or a single strand. You can label the plasmid with genes and restriction sites in different colors, text, and styles. Plasmid map can be highly customized. You can arrange...


Platforms: Windows

License: Freeware Size: 1.5 MB Download (171): BVTech Plasmid Download

Added: August 28, 2008 | Visits: 1.322

Alchemy Help Desk BVTech Plasmid is DNA plasmid drawing software that you can use to draw circle or linear plasmid maps with double strands or a single strand. You can label the plasmid with genes and restriction sites in different colors, text, and styles. Plasmid map can be highly customized. You can arrange...


Platforms: Windows

License: Freeware Size: 1.5 MB Download (144): Alchemy Help Desk Download

Added: January 25, 2010 | Visits: 551

4Peaks 4Peaks is a program that helps molecular biologists to visualize and edit their DNA sequence files. At last there is a decent solution for analyzing trace files on the Mac OS X platform, taking another step away from slow and non-native programs from the Mac OS 9 period. Also, 4Peaks supports...


Platforms: Mac

License: Freeware Download (106): 4Peaks Download

Released: September 09, 2012  |  Added: September 09, 2012 | Visits: 276

Geneious for Mac OS An automatically-updating library of genomic and genetic data; that provides a fully integrated, visually-advanced toolset for - Sequence alignment and phylogenetics - Sequence analysis, Contig assembly, - primers, restriction analysis - BLAST. Protein structure viewing, NCBI, UniProt, Pubmed...


Platforms: Mac

License: Freeware Size: 77 MB Download (28): Geneious for Mac OS Download

Released: August 07, 2012  |  Added: August 07, 2012 | Visits: 208

MacGDE for Mac OS A set of programs for multiple sequence alignment and analysis. The programs use an expandable user interface which allows the addition of external analysis functions without any rewriting of code. The system supports several data types, nucleic and amino acid sequences, text, and masking...


Platforms: Mac

License: Freeware Size: 42.8 MB Download (28): MacGDE for Mac OS Download

Released: October 14, 2012  |  Added: October 14, 2012 | Visits: 236

BACContigEditor BACContigEditor is a simple sequence alignment editing tool, written in Java. It is originally developed for finishing BAC shotgun sequencing projects, but the program could be easily extended to the whole genome project.


Platforms: Windows, Mac, Linux

License: Freeware Size: 867.54 KB Download (27): BACContigEditor Download

Released: August 12, 2012  |  Added: August 12, 2012 | Visits: 217

JAligner JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.


Platforms: Windows, Mac, Linux

License: Freeware Size: 162.36 KB Download (28): JAligner Download

Released: June 08, 2012  |  Added: June 08, 2012 | Visits: 275

Sequences studio Sequence studio main package provides classes and interfaces for various kinds of sequence alignment. Differently from regular expressions it computes similarity with two initially unknown strings. Project page provides code generating applet.


Platforms: Windows, Mac, Linux

License: Freeware Size: 96.58 KB Download (27): Sequences studio Download

Released: October 16, 2012  |  Added: October 16, 2012 | Visits: 225

SmithWaterman An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/


Platforms: Mac, BSD, Linux

License: Freeware Size: 43.02 KB Download (29): SmithWaterman Download

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